5. Bibliography


Caihong Fu, Norm Olsen, Nathan Taylor, Arnaud Grüss, Sonia Batten, Huizhu Liu, Philippe Verley, and Yunne-Jai Shin. Spatial and temporal dynamics of predator-prey species interactions off western Canada. ICES Journal of Marine Science, 74(8):2107–2119, 05 2017. URL: https://dx.doi.org/10.1093/icesjms/fsx056, arXiv:http://oup.prod.sis.lan/icesjms/article-pdf/74/8/2107/20143985/fsx056.pdf, doi:10.1093/icesjms/fsx056.


Caihong Fu, R Ian Perry, Yunne-Jai Shin, Jake Schweigert, and Huizhu Liu. An ecosystem modelling framework for incorporating climate regime shifts into fisheries management. Progress in oceanography, 115:53–64, 2013.


Arnaud Grüss, Michael J Schirripa, David Chagaris, Michael Drexler, James Simons, Philippe Verley, Yunne-Jai Shin, Mandy Karnauskas, Ricardo Oliveros-Ramos, and Cameron H Ainsworth. Evaluation of the trophic structure of the west florida shelf in the 2000s using the ecosystem model osmose. Journal of Marine Systems, 144:30–47, 2015.


Ghassen Halouani, Frida Ben Rais Lasram, Yunne-Jai Shin, Laure Velez, Philippe Verley, Tarek Hattab, Ricardo Oliveros-Ramos, Frédéric Diaz, Frédéric Ménard, Melika Baklouti, Arnaud Guyennon, Mohamed Salah Romdhane, and François Le Loch. Modelling food web structure using an end-to-end approach in the coastal ecosystem of the Gulf of Gabes (Tunisia). Ecological Modelling, 339(Supplement C):45–57, 2016. URL: http://www.sciencedirect.com/science/article/pii/S0304380016303118, doi:https://doi.org/10.1016/j.ecolmodel.2016.08.008.


Ricardo Oliveros Ramos. End-to-end modelling for an ecosystem approach to fisheries in the Northern Humboldt Current Ecosystem. PhD thesis, University of Montpellier, France, 2014.


Ricardo Oliveros-Ramos and Yunne-Jai Shin. calibrar: an R package for fitting complex ecological models. ????, ???:???, ??? 2017.


Ricardo Oliveros-Ramos, Philippe Verley, Vincent Echevin, and Yunne-Jai Shin. A sequential approach to calibrate ecosystem models with multiple time series data. PROGRESS IN OCEANOGRAPHY, 151:227-244, FEB 2017. doi:{10.1016/j.pocean.2017.01.002}.


YJ Shin and P Cury. Exploring fish community dynamics through size-dependent trophic interactions using a spatialized individual-based model. AQUATIC LIVING RESOURCES, 14(2):65-80, MAR-APR 2001. doi:{10.1016/S0990-7440(01)01106-8}.


YJ Shin and P Cury. Using an individual-based model of fish assemblages to study the response of size spectra to changes in fishing. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 61(3):414-431, MAR 2004. doi:{10.1139/F03-154}.


M Travers, YJ Shin, L Shannon, and P Cury. Simulating and testing the sensitivity of ecosystem-based indicators to fishing in the southern Benguela ecosystem. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 63(4):943-956, APR 2006. doi:{10.1139/1706-003}.


M. Travers, Y.-J. Shin, S. Jennings, E. Machu, J.A. Huggett, J.G. Field, and P.M. Cury. Two-way coupling versus one-way forcing of plankton and fish models to predict ecosystem changes in the benguela. Ecological Modelling, 220(21):3089 – 3099, 2009. Selected Papers from the Sixth European Conference on Ecological Modelling - ECEM '07, on Challenges for ecological modelling in a changing world: Global Changes, Sustainability and Ecosystem Based Management, November 27-30, 2007, Trieste, Italy. URL: http://www.sciencedirect.com/science/article/pii/S0304380009005766, doi:https://doi.org/10.1016/j.ecolmodel.2009.08.016.


M Travers-Trolet, Y-J Shin, and JG Field. An end-to-end coupled model roms-n2p2z2d2-osmose of the southern benguela foodweb: parameterisation, calibration and pattern-oriented validation. African Journal of Marine Science, 36(1):11–29, 2014. URL: https://doi.org/10.2989/1814232X.2014.883326, arXiv:https://doi.org/10.2989/1814232X.2014.883326, doi:10.2989/1814232X.2014.883326.