Index

B

biomass.byDt.bySize.file.bkg#

F

fisheries.catchability.file fisheries.catchability.file.cat# fisheries.catchability.finalYear.cat# fisheries.catchability.initialYear.cat# fisheries.catchability.steps.cat# fisheries.catchability.years.cat# fisheries.check.enabled fisheries.discards.file fisheries.discards.file.dis# fisheries.discards.finalYear.dis# fisheries.discards.initialYear.dis# fisheries.discards.steps.dis# fisheries.discards.years.dis# fisheries.period.number.fsh# fisheries.period.start.fsh# fisheries.rate.base.fsh# fisheries.rate.base.log.enabled.fsh#

fisheries.rate.base.shift.fsh# fisheries.rate.byperiod.fsh# fisheries.seasonality.file.fsh# fisheries.seasonality.fsh# fisheries.selectivity.a50.file.fsh# fisheries.selectivity.a50.fsh# fisheries.selectivity.a50.shift.fsh# fisheries.selectivity.l50.file.fsh# fisheries.selectivity.l50.fsh# fisheries.selectivity.l50.shift.fsh# fisheries.selectivity.l75.file.fsh# fisheries.selectivity.l75.fsh# fisheries.selectivity.l75.shift.fsh# fisheries.selectivity.tiny.fsh# fisheries.selectivity.type.file.fsh# fisheries.selectivity.type.fsh# fisheries.selectivity.type.shift.fsh#

G

grid.lowright.lat grid.lowright.lon grid.mask.file grid.ncolumn grid.netcdf.file, [1] grid.nline grid.stride, [1] grid.upleft.lat grid.upleft.lon grid.var.lat

grid.var.lon grid.var.mask growth.exponential.ke.sp# growth.exponential.lstart.sp# growth.exponential.thr.age.sp# growth.gompertz.kg.sp# growth.gompertz.linf.sp# growth.gompertz.tg.sp# growth.gompertz.thr.age.sp# growth.java.classname.sp#

L

ltl.integration.depth, [1], [2] ltl.netcdf.dim.ntime ltl.netcdf.file ltl.netcdf.file.plk# ltl.netcdf.file.t#, [1], [2] ltl.netcdf.grid.file ltl.netcdf.var.bathy, [1]

ltl.netcdf.var.csr ltl.netcdf.var.hc ltl.netcdf.var.lat ltl.netcdf.var.lon ltl.netcdf.var.plankton.plk#, [1], [2] ltl.netcdf.var.zlevel, [1] ltl.nstep, [1], [2], [3], [4]

M

mortality.fishing.catches.byDt.byAge.file.sp# mortality.fishing.catches.byDt.bySize.file.sp# mortality.fishing.catches.byYear.file.sp# mortality.fishing.catches.sp# mortality.fishing.rate.byDt.byAge.file.sp# mortality.fishing.rate.byDt.bySize.file.sp# mortality.fishing.rate.byYear.file.sp# mortality.fishing.rate.sp# mortality.fishing.recruitment.age.sp# mortality.fishing.recruitment.size.sp# mortality.fishing.season.distrib.file.sp#, [1]

mortality.fishing.type mortality.out.rate.sp# mortality.starvation.rate.max.sp# mortality.subdt movement.bkgspecies.class.map# movement.bkgspecies.season.map# movement.bkgspecies.species.map# movement.bkgspecies.year.max.map# movement.bkgspecies.year.min.map# mpa.end.year.mpa# mpa.file.mpa# mpa.start.year.mpa#

P

plankton.accessibility2fish.plk# plankton.biomass.total.plk#, [1] plankton.conversion2tons.plk#, [1], [2] plankton.multiplier.plk#, [1] plankton.name.plk# plankton.size.max.plk# plankton.size.min.plk# plankton.TL.plk# population.initialization.age.sp# population.initialization.biomass.sp# population.initialization.file population.initialization.nschool.sp# population.initialization.relativebiomass.enabled population.initialization.relativebiomass.sp# population.initialization.seed population.initialization.size.sp# population.initialization.tl.sp# population.seeding.biomass.sp# population.seeding.year.max

predation.accessibility.file predation.accessibility.file.acc# predation.accessibility.finalYear.acc# predation.accessibility.initialYear.acc# predation.accessibility.stage.structure predation.accessibility.stage.threshold.bkg# predation.accessibility.stage.threshold.sp# predation.accessibility.steps.acc# predation.accessibility.years.acc# predation.efficiency.critical.bkg# predation.efficiency.critical.sp#, [1], [2] predation.ingestion.rate.max.bkg# predation.ingestion.rate.max.sp#, [1] predation.predPrey.sizeRatio.max.bkg# predation.predPrey.sizeRatio.max.sp#, [1] predation.predPrey.sizeRatio.min.bkg# predation.predPrey.sizeRatio.min.sp#, [1] predation.predPrey.stage.structure predation.predPrey.stage.threshold.bkg# predation.predPrey.stage.threshold.sp#, [1]

S

simulation.restart.file species.accessibility2fish.sp# species.age.sp# species.biomass.total.sp#, [1] species.delta.lmax.factor.sp# species.file.caching.sp#, [1] species.file.sp#, [1] species.k.sp# species.length.sp# species.length2weight.allometric.power.bkg# species.length2weight.allometric.power.sp# species.length2weight.condition.factor.bkg# species.length2weight.condition.factor.sp#

species.linf.sp#, [1] species.name.bkg# species.name.sp#, [1] species.nclass.sp# species.size.max.sp# species.size.min.sp# species.size.proportion.sp# species.t0.sp# species.TL.sp# species.trophiclevel.bkg# species.trophiclevel.sp# species.type.sp# species.vonbertalanffy.threshold.age.sp# stochastic.mortality.seed